MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-17-P1b

Family name MIR-17 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-17-P1a  Cmi-Mir-17-P1c  Cmi-Mir-17-P1d  Cmi-Mir-17-P2a  Cmi-Mir-17-P2c  Cmi-Mir-17-P3b  Cmi-Mir-17-P4a  Cmi-Mir-17-P4b  Cmi-Mir-17-P4c  Cmi-Mir-17-P4d 
Orthologues Sto-Mir-17-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635855.1: 9354316-9354375 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1b)		 Mir-17-P1b KI635855.1: 9354316-9354375 [+] UCSC Ensembl
Mir-17-P3b KI635855.1: 9356646-9356708 [+] UCSC Ensembl
Mir-17-P4b KI635855.1: 9358118-9358178 [+] UCSC Ensembl
Mir-19-P2b KI635855.1: 9358429-9358492 [+] UCSC Ensembl
Mir-92-P1b KI635855.1: 9359483-9359541 [+] UCSC Ensembl
Mir-92-P2b KI635855.1: 9359771-9359830 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
UCCGUGGAAUAGCACCUGUCCGAGUAGUGCCAAAGUGCUGACAGUGCAGGUAGUGAUGGGACCUUCUACUGCAGUGUAAGCACUUCCUGUUCUCCUCGUACAAACCAUCUUCCCUGAAGA
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Structure
        10          20        30         40        50         
UCCGUGGAAUAGCACCU--  C    U  U  CA-|      G   G     G   UGAUG 
                   GU CGAG AG GC   AAGUGCU ACA UGCAG UAG     G
                   CA GCUC UC UG   UUCACGA UGU ACGUC AUC     G
AGAAGUCCCUUCUACCAAA  U    C  U  UCC^      A   G     -   UUCCA 
.       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-17-P1b_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGACAGUGCAGGUAG -23
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Star sequence

Cmi-Mir-17-P1b_3p*
mirBase accessionNone
Sequence 
37- ACUGCAGUGUAAGCACUUCCUGU -60
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