Mir-15-P1b

MirGeneDB ID

Tgu-Mir-15-P1b

Family name

MIR-15 (all species)

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-15b

Paralogues

Tgu-Mir-15-P1a Tgu-Mir-15-P1c Tgu-Mir-15-P2a Tgu-Mir-15-P2b Tgu-Mir-15-P2c

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(TaeGut1_add)

9: 23954743-23954802 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P2b 9: 23954584-23954647 [-] UCSC Ensembl
Mir-15-P1b 9: 23954743-23954802 [-] UCSC Ensembl

Seed

AGCAGCA

Precursor
(pre-Mir +30nt flank)

AAAUGUUGCCUGGGAGGCCUCGAAGUGCUGUAGCAGCACAUCAUGGUUUGCAUGCUCUGCUCAGGGUGCAAAUCAUGAUUUGCUGCUGUAGGAAUUGAAGGCUCAGAAGCACUGGGGGAU

Get precursor sequence

Structure

        10           20        30        40        50         
AAAUGUUGCCUGGGAGG--  -|   AGUG           C             UGCUCU 
                   CC UCGA    CUGUAGCAGCA AUCAUGGUUUGCA      G
                   GG AGUU    GAUGUCGUCGU UAGUACUAAACGU      C
UAGGGGGUCACGAAGACUC  A^   AAG-           U             GGGACU 
.       110       100         90        80        70        60