MirGeneDB 3.0

41 microRNA genes with node of origin P. caudatus

						Sort by genome coordinates								Motifs
MirGeneDB ID ▲	MiRBase ID	Family	Seed	5p accession	3p accession	Chromosome	Start	End	Strand	Node of origin (locus)	Node of origin (family)	Iso­miR	3' NTU	UG	UGUG	CNNC
Pca-Mir-2-o139	None	MIR-2	AUCACAG	None	None	KQ715494.1	124532	124588	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o140	None	MIR-2	AUCACAG	None	None	KQ715494.1	124356	124415	-	P. caudatus	Protostomia		No		1	1
Pca-Mir-2-o141	None	MIR-2	AUCACAG	None	None	KQ715494.1	124073	124133	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o142	None	MIR-2	AUCACAG	None	None	KQ715271.1	34836	34894	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o143	None	MIR-2	AUCACAG	None	None	KQ715271.1	34696	34756	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o144	None	MIR-2	AUCACAG	None	None	KQ715271.1	34504	34565	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o145	None	MIR-2	AUCACAG	None	None	KQ715271.1	32509	32573	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o146	None	MIR-2	AUCACAG	None	None	KQ715780.1	17587	17642	+	P. caudatus	Protostomia		No	1		1
Pca-Mir-2-o147	None	MIR-2	AUCACAG	None	None	KQ715780.1	17758	17818	+	P. caudatus	Protostomia		No			1
Pca-Mir-2-o148	None	MIR-2	AUCACAG	None	None	KQ715780.1	18746	18808	+	P. caudatus	Protostomia		No			1
Pca-Mir-2-o149	None	MIR-2	AUCACAG	None	None	KQ716084.1	1768	1828	-	P. caudatus	Protostomia		No	1		1
Pca-Mir-2-o150	None	MIR-2	AUCACAG	None	None	KQ716084.1	1503	1563	-	P. caudatus	Protostomia		No	1		1
Pca-Mir-2-o151	None	MIR-2	AUCACAG	None	None	KQ716084.1	1255	1318	-	P. caudatus	Protostomia		No			1
Pca-Mir-2-o152	None	MIR-2	AUCACAG	None	None	KQ716084.1	229	289	-	P. caudatus	Protostomia		No			1
Pca-Mir-9-P31	None	MIR-9	CUUUGGU	None	None	KQ715418.1	82183	82242	+	P. caudatus	Bilateria		No
Pca-Mir-9-P32	None	MIR-9	CUUUGGU	None	None	KQ715199.1	119342	119403	-	P. caudatus	Bilateria		Unknown			1
Pca-Mir-12-P12	None	MIR-12	GAGUAUU	None	None	KQ715014.1	183644	183702	-	P. caudatus	Protostomia		Unknown			1
Pca-Mir-12-P13	None	MIR-12	GAGUAUU	None	None	KQ715627.1	148169	148228	-	P. caudatus	Protostomia		No		1	1
Pca-Mir-29-o6	None	MIR-29	AGCACCA	None	None	KQ717034.1	31025	31084	-	P. caudatus	Bilateria		No			1
Pca-Mir-29-o7	None	MIR-29	AGCACCA	None	None	AXZU02088352.1	107	163	+	P. caudatus	Bilateria		No
Pca-Mir-36-P23	None	MIR-36	CACCGGG	None	None	KQ715408.1	303049	303105	+	P. caudatus	Protostomia		Unknown			1
Pca-Mir-36-P24	None	MIR-36	CACCGGG	None	None	KQ715408.1	303221	303277	+	P. caudatus	Protostomia		Unknown	1		1
Pca-Mir-36-P25	None	MIR-36	CACCGGG	None	None	KQ715408.1	303392	303448	+	P. caudatus	Protostomia		Unknown			1
Pca-Mir-87-o22	None	MIR-87	UGAGCAA	None	None	KQ715638.1	116649	116711	+	P. caudatus	Protostomia		No			1
Pca-Mir-87-o23	None	MIR-87	UGAGCAA	None	None	KQ715148.1	408163	408224	+	P. caudatus	Protostomia		No			1
Pca-Mir-92-o96	None	MIR-92	AUUGCAC	None	None	KQ716014.1	7152	7210	-	P. caudatus	Bilateria		No			1
Pca-Mir-92-o97	None	MIR-92	AUUGCAC	None	None	KQ716181.1	38405	38465	-	P. caudatus	Bilateria		No	1		1
Pca-Mir-184-P30	None	MIR-184	GGACGGA	None	None	KQ714999.1	319378	319436	-	P. caudatus	Nephrozoa		No			1
Pca-Mir-184-P31	None	MIR-184	GGACGGA	None	None	KQ715149.1	25336	25394	-	P. caudatus	Nephrozoa		No			1
Pca-Mir-279-o27	None	MIR-279	GACUAGA	None	None	KQ715408.1	301499	301556	+	P. caudatus	Protostomia		No
Pca-Mir-279-o28	None	MIR-279	GACUAGA	None	None	KQ716035.1	12684	12743	+	P. caudatus	Protostomia		No			1
Pca-Mir-279-o29	None	MIR-279	GACUAGA	None	None	KQ716014.1	17538	17596	-	P. caudatus	Protostomia		Yes	1		1
Pca-Mir-279-o30	None	MIR-279	GACUAGA	None	None	KQ716014.1	16868	16927	-	P. caudatus	Protostomia		No
Pca-Mir-279-o31	None	MIR-279	GACUAGA	None	None	KQ716181.1	67909	67966	-	P. caudatus	Protostomia		No
Pca-Mir-279-o32	None	MIR-279	GACUAGA	None	None	KQ716181.1	67725	67783	-	P. caudatus	Protostomia		Yes	1		1
Pca-Mir-279-o33	None	MIR-279	GACUAGA	None	None	KQ716181.1	66996	67057	-	P. caudatus	Protostomia		No	1
Pca-Novel-1	None	PCA-NOVEL-1	AGGCCAU	None	None	KQ714938.1	413106	413164	+	P. caudatus	P. caudatus		No			1
Pca-Novel-2	None	PCA-NOVEL-2	CUAGCAU	None	None	KQ715891.1	63716	63775	-	P. caudatus	P. caudatus		No	1		1
Pca-Novel-3-P2	None	PCA-NOVEL-3	CUUUCUC	None	None	KQ715186.1	93118	93177	+	P. caudatus	P. caudatus		No			1
Pca-Novel-4	None	PCA-NOVEL-4	UGGCGUU	None	None	KQ715038.1	626891	626950	+	P. caudatus	P. caudatus		No			1
Pca-Novel-5	None	PCA-NOVEL-5	UUGAAAG	None	None	KQ715186.1	171157	171217	-	P. caudatus	P. caudatus		No			1

(red - mature/co-mature, blue - star)

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