MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-12598-P5a

Family name MIR-12598 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-12598-P1a  Ava-Mir-12598-P1b  Ava-Mir-12598-P2a  Ava-Mir-12598-P2b  Ava-Mir-12598-P3  Ava-Mir-12598-P4a  Ava-Mir-12598-P4b  Ava-Mir-12598-P5b  Ava-Mir-12598-P6a  Ava-Mir-12598-P6b  Ava-Mir-12598-P7a  Ava-Mir-12598-P7b 
Orthologues
Node of Origin (locus) A. vaga
Node of Origin (family) Rotifera
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075497.1: 2491217-2491279 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12598-P5a)		 Novel-2-P1 CP075497.1: 2491111-2491168 [+] Ensembl
Mir-12598-P5a CP075497.1: 2491217-2491279 [+] Ensembl
Mir-12598-P7b CP075497.1: 2491342-2491403 [+] Ensembl
Mir-12598-P1a CP075497.1: 2491467-2491526 [+] Ensembl
Novel-6-P1 CP075497.1: 2491586-2491648 [+] Ensembl
Seed CACUGUU
Precursor
(pre-Mir +30nt flank)		 
GUCAUAUACAAUCUCUUCUUAUGUACAUUAUCACUGUUCGAUGUGCCUCCCUUGAGUGAUAGGAAAGACUAGGGAGAUGCAGGAAUAGUGCAAAUGCGCAGAAGAAUUUCCUAUUUUCUUUUU
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Structure
        10          20        30        40        50        60 
GUCAUAUACAAUCUCUU--|  A  UA    AU        GA   GC      UGAGUGAU 
                   CUU UG  CAUU  CACUGUUC  UGU  CUCCCU        A
                   GAA AC  GUAA  GUGAUAAG  ACG  GAGGGA        G
UUUUUCUUUUAUCCUUUAA^  G  GC    AC        G-   UA      UCAGAAAG 
 120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To To
Mature sequence

Ava-Mir-12598-P5a_5p
mirBase accessionNone
Sequence 
0- UCACUGUUCGAUGUGCCUCCCUU -23
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Star sequence

Ava-Mir-12598-P5a_3p*
mirBase accessionNone
Sequence 
42- GGAGAUGCAGGAAUAGUGCAA -63
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