Mir-71-P21

MirGeneDB ID

Ava-Mir-71-P21

Family name

MIR-71 (all species)

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-71-P20

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

A. vaga

Node of Origin (family)

Nephrozoa

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075494.1: 5318402-5318464 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-71-P21)

Mir-2-o139b-v1 CP075494.1: 5318243-5318303 [-] Ensembl
Mir-2-o139b-v2 CP075494.1: 5318244-5318302 [-] Ensembl
Mir-71-P21 CP075494.1: 5318402-5318464 [-] Ensembl

Seed

GAAAGAC

Precursor
(pre-Mir +30nt flank)

UAAAUGGAUUUAUCGUGAAAAGAUCUUCUAUGAAAGACAUGGGUAGUGAGAUGUUGAUUAAUGAUUGCUCACCUUACUAGUCUGUCUUUCCAAAGAAUGUCUUUUUUAUUCGACAGACAAAUU

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Structure

        10         20        30         40        50        60 
UAAAUGGAUUUAUCGUG-       C    AU-|       U  G       A  UUGAUUA 
                  AAAAGAU UUCU   GAAAGACA GG UAGUGAG UG       A
                  UUUUCUG AAGA   CUUUCUGU CU AUCAUUC AC       U
UUAAACAGACAGCUUAUU       U    AAC^       -  G       C  UCGUUAG 
 120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Ava-Mir-71-P21_5p

mirBase accession

None

Sequence

0- UGAAAGACAUGGGUAGUGAGAUG -23

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Star sequence

Ava-Mir-71-P21_3p*

mirBase accession

None

Sequence

41- CCUUACUAGUCUGUCUUUCCAA -63

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