MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-71-P20

Family name MIR-71 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-71-P21 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) A. vaga
Node of Origin (family) Nephrozoa
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075495.1: 15778284-15778347 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71-P20)		 Mir-71-P20 CP075495.1: 15778284-15778347 [+] Ensembl
Mir-2-o139a CP075495.1: 15778415-15778482 [+] Ensembl
Seed GAAAGAC
Precursor
(pre-Mir +30nt flank)		 
AUUUAUAUAAAACUAAGAAAAGAUCUUCUAUGAAAGACAUGGGUAGUGAGAUGUUUUUUUAUUUCGAUUUCAUCUUACUAGUCUGUCUUUCCAAAGAAUGUCUUUAUUACAAAGUUUCUUUUUU
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Structure
        10         20        30         40        50        60  
AUUUAUAUAAAACUAAGA-      C    AU-|       U  G          UUUUUUUA 
                   AAAGAU UUCU   GAAAGACA GG UAGUGAGAUG        \
                   UUUCUG AAGA   CUUUCUGU CU AUCAUUCUAC        U
UUUUUUCUUUGAAACAUUA      U    AAC^       -  G          UUUAGCUU 
  120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To To
Mature sequence

Ava-Mir-71-P20_5p
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Star sequence

Ava-Mir-71-P20_3p*
mirBase accessionNone
Sequence 
42- UCUUACUAGUCUGUCUUUCCAA -64
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