Mir-92-P1d

MirGeneDB ID

Cfa-Mir-92-P1d

Family name

MIR-92 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-92b

Paralogues

Cfa-Mir-92-P1a Cfa-Mir-92-P1c Cfa-Mir-92-P2a Cfa-Mir-92-P2c Cfa-Mir-92-P2d

Orthologues

Ami-Mir-92-P1d Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1d Cel-Mir-92 Cja-Mir-92-P1d Cmi-Mir-92-P1d Cpi-Mir-92-P1d Cpo-Mir-92-P1d Dno-Mir-92-P1d Dre-Mir-92-P1d Eca-Mir-92-P1d Esc-Mir-92 Ete-Mir-92-P1d Gja-Mir-92-P1d Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1d Isc-Mir-92 Laf-Mir-92-P1d Lch-Mir-92-P1d Loc-Mir-92-P1d Mal-Mir-92-P1d Mdo-Mir-92-P1d Mml-Mir-92-P1d Mmr-Mir-92-P1d Mmu-Mir-92-P1d Mun-Mir-92-P1d Oan-Mir-92-P1d Obi-Mir-92 Ocu-Mir-92-P1d Pab-Mir-92-P1d Pbv-Mir-92-P1d Rno-Mir-92-P1d Sha-Mir-92-P1d Sme-Mir-92 Spt-Mir-92-P1d Sto-Mir-92-P1d Tgu-Mir-92-P1d Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xtr-Mir-92-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(canFam3_add)

chr7: 42338480-42338542 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GAGCGGGAUCCCGGGCCCCGGGUGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUCUCCCCCGCCAAUAUUGCACUCGUCCCGGCCUCCGGCCCCCCCGGCCCCCCGGCCUCCCCCUCG

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAGCGGGAUCCCGGGCC--|    U    G     GA       C           GUUCUCU 
                   CCGGG GGGC GGAGG  CGGGACG GGUGCAGUGUU       \
                   GGCCC CCCG CCUCC  GCCCUGC UCACGUUAUAA       C
GCUCCCCCUCCGGCCCCCC^    C    G     G-       -           CCGCCCC 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-92-P1d_5p*

mirBase accession

None

Sequence

0- AGGGACGGGACGCGGUGCAGUGUU -24

Get sequence

Mature sequence

Cfa-Mir-92-P1d_3p

mirBase accession

MIMAT0006703

Sequence

41- UAUUGCACUCGUCCCGGCCUCC -63

Get sequence

Proposed targets

TargetScanVert: cfa-miR-92b
miRDB: MIMAT0006703