| MirGeneDB ID | Cpo-Mir-92-P1d |
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| Family name |
MIR-92 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-92b
|
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| Paralogues |
Cpo-Mir-92-P1a
Cpo-Mir-92-P1c
Cpo-Mir-92-P2a
Cpo-Mir-92-P2c
Cpo-Mir-92-P2d
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| Orthologues |
Ami-Mir-92-P1d
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Bta-Mir-92-P1d
Cel-Mir-92
Cfa-Mir-92-P1d
Cja-Mir-92-P1d
Cmi-Mir-92-P1d
Cpi-Mir-92-P1d
Dno-Mir-92-P1d
Dre-Mir-92-P1d
Eca-Mir-92-P1d
Esc-Mir-92
Ete-Mir-92-P1d
Gja-Mir-92-P1d
Gsp-Mir-92
Hmi-Mir-92
Hsa-Mir-92-P1d
Isc-Mir-92
Laf-Mir-92-P1d
Lch-Mir-92-P1d
Loc-Mir-92-P1d
Mal-Mir-92-P1d
Mdo-Mir-92-P1d
Mml-Mir-92-P1d
Mmr-Mir-92-P1d
Mmu-Mir-92-P1d
Mun-Mir-92-P1d
Oan-Mir-92-P1d
Obi-Mir-92
Ocu-Mir-92-P1d
Pab-Mir-92-P1d
Pbv-Mir-92-P1d
Rno-Mir-92-P1d
Sha-Mir-92-P1d
Sme-Mir-92
Spt-Mir-92-P1d
Sto-Mir-92-P1d
Tgu-Mir-92-P1d
Xla-Mir-92-P1d1
Xla-Mir-92-P1d2
Xtr-Mir-92-P1d
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Bilateria
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Genome context
(cavPor3) |
scaffold_10: 16106081-16106143 [+]
UCSC
|
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| Seed |
AUUGCAC |
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Precursor
(pre-Mir +30nt flank) |
GAGCGGGAUUCCGGGCCCCGGGCGGGCGGGAGGGACGGGACGCGGUGCAGUGUUGUUCUUUCCCCCACCAAUAUUGCACUCGUCCCGGCCUCCGGCCUCCUCGGCCCCCCGGCCUCCCCUUCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAGCGGGAUUCCGGGCC--| C G GA C GUUCUUU
CCGGG GGGC GGAGG CGGGACG GGUGCAGUGUU \
GGCUC UCCG CCUCC GCCCUGC UCACGUUAUAA C
ACUUCCCCUCCGGCCCCCC^ C G G- - CCACCCC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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| Star sequence |
Cpo-Mir-92-P1d_5p* |
| mirBase accession | MIMAT0046931 |
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| Sequence |
0- AGGGACGGGACGCGGUGCAGUGUU -24
Get sequence
|
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| Mature sequence |
Cpo-Mir-92-P1d_3p |
| mirBase accession | MIMAT0046932 |
|---|
| Sequence |
41- UAUUGCACUCGUCCCGGCCUCC -63
Get sequence
|
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