Mir-136

MirGeneDB ID

Cja-Mir-136

Family name

MIR-136 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-136-v1 Cfa-Mir-136-v1 Cpo-Mir-136-v1 Dno-Mir-136-v1 Eca-Mir-136-v1 Ete-Mir-136-v1 Hsa-Mir-136-v1 Laf-Mir-136 Mml-Mir-136-v1 Mmr-Mir-136-v1 Mmu-Mir-136-v1 Ocu-Mir-136-v1 Pab-Mir-136 Rno-Mir-136-v1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131692180-131692235 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-136)

Mir-770 CM021924.1: 131654447-131654508 [+] UCSC Ensembl
Mir-493 CM021924.1: 131672486-131672548 [+] UCSC Ensembl
Mir-337 CM021924.1: 131682138-131682197 [+] UCSC Ensembl
Mir-431 CM021924.1: 131688487-131688550 [+] UCSC Ensembl
Mir-433 CM021924.1: 131689358-131689431 [+] UCSC Ensembl
Mir-127 CM021924.1: 131690462-131690517 [+] UCSC Ensembl
Mir-432 CM021924.1: 131691960-131692028 [+] UCSC Ensembl
Mir-136 CM021924.1: 131692180-131692235 [+] UCSC Ensembl
Mir-370 CM021924.1: 131718304-131718360 [+] UCSC Ensembl

Seed

CUCCAUU

Precursor
(pre-Mir +30nt flank)

CCUCGGUGGUGCUGGAUGAGCCCUCGGAGGACUCCAUUUGUUUUGAUGAUGGAUUCUUAUGCUCCAUCAUCGUCUCAAAUGAGUCUUCAGAGGGUUCUAUCAUUUCGUCGGAUGAC

Get precursor sequence

Structure

        10          20        30        40        50        
CCUCGGUGGUGCUGGAU--|       G        C     UUU         AUUCU 
                   GAGCCCUC GAGGACUC AUUUG   UGAUGAUGG     \
                   CUUGGGAG CUUCUGAG UAAAC   GCUACUACC     U
CAGUAGGCUGCUUUACUAU^       A        -     UCU         UCGUA 
    110       100        90         80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Cja-Mir-136_5p (predicted)

mirBase accession

None

Sequence

0- ACUCCAUUUGUUUUGAUGAUGG -22

Get sequence

Star sequence

Cja-Mir-136_3p* (predicted)

mirBase accession

None

Sequence

35- AUCAUCGUCUCAAAUGAGUCU -56

Get sequence