Mir-493

MirGeneDB ID

Cja-Mir-493

Family name

MIR-493 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Orthologues

Bta-Mir-493 Cfa-Mir-493 Cpo-Mir-493 Dno-Mir-493 Eca-Mir-493 Ete-Mir-493 Hsa-Mir-493 Laf-Mir-493 Mml-Mir-493 Mmr-Mir-493 Mmu-Mir-493 Ocu-Mir-493 Pab-Mir-493 Rno-Mir-493

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021924.1: 131672486-131672548 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-493)

Mir-770 CM021924.1: 131654447-131654508 [+] UCSC Ensembl
Mir-493 CM021924.1: 131672486-131672548 [+] UCSC Ensembl
Mir-337 CM021924.1: 131682138-131682197 [+] UCSC Ensembl
Mir-431 CM021924.1: 131688487-131688550 [+] UCSC Ensembl
Mir-433 CM021924.1: 131689358-131689431 [+] UCSC Ensembl
Mir-127 CM021924.1: 131690462-131690517 [+] UCSC Ensembl
Mir-432 CM021924.1: 131691960-131692028 [+] UCSC Ensembl
Mir-136 CM021924.1: 131692180-131692235 [+] UCSC Ensembl
Mir-370 CM021924.1: 131718304-131718360 [+] UCSC Ensembl

Seed

UGUACAU

Precursor
(pre-Mir +30nt flank)

GCUUCGGCGCUCAUUCUGGCCUCCAGGGCUUUGUACAUGGUAGGCUUUCAUUCAUUCGUUUGCACAUUCGGUGAAGGUCUACUGUGUGCCAGGCCCUGUGCCAGGUAUCGUGUAGAGUCCACA

Get precursor sequence

Structure

        10            20        30        40        50        60 
GCUUCGGCGCUCAUUCU----|  CUC        U                    CAUUCGUU 
                     GGC   CAGGGCUU GUACAUGGUAGGCUUUCAUU        \
                     CCG   GUCCCGGA CGUGUGUCAUCUGGAAGUGG        U
ACACCUGAGAUGUGCUAUGGA^  U--        C                    CUUACACG 
 120       110       100          90        80        70

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Cja-Mir-493_5p (predicted)

mirBase accession

None

Sequence

0- UUGUACAUGGUAGGCUUUCAUU -22

Get sequence

Star sequence

Cja-Mir-493_3p* (predicted)

mirBase accession

None

Sequence

41- UGAAGGUCUACUGUGUGCCAGG -63

Get sequence