MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-221-P2a

Family name MIR-221 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-221-P1a  Cmi-Mir-221-P1c 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cja-Mir-221-P2a  Cli-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Eca-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Laf-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmr-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Neu-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pab-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635858.1: 3689867-3689927 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P2a)		 Mir-221-P2a KI635858.1: 3689867-3689927 [-] UCSC Ensembl
Mir-221-P1a KI635858.1: 3691581-3691641 [-] UCSC Ensembl
Seed CCUGGCA
Precursor
(pre-Mir +30nt flank)		 
GACAGACAAUUUUUCCCAGGCUUGGCCUGAACCUGGCAUACAAUGUAGAAUUCUGUGUUAGUACCAACAGCUACAUUGUCUGCUGGGUUUCAGACUACCUGGAACAGCAGAGAAUCACUAA
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Structure
        10            20        30         40        50        60 
GACAGACAAUUUUUCCC----|  CU   C     -  UG   U         AAUU    GUUA 
                     AGG  UGG CUGAA CC  GCA ACAAUGUAG    CUGU    G
                     UCC  AUC GACUU GG  CGU UGUUACAUC    GACA    U
AAUCACUAAGAGACGACAAGG^  --   A     U  GU   C         ----    ACCA 
 .       110       100          90        80            70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-221-P2a_5p
mirBase accessionNone
Sequence 
0- ACCUGGCAUACAAUGUAGAAUUCUGU -26
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Star sequence

Cmi-Mir-221-P2a_3p*
mirBase accessionNone
Sequence 
38- AGCUACAUUGUCUGCUGGGUUUC -61
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