MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-17-P1e

Family name MIR-17 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-17-P2e  Ebu-Mir-17-P3e  Ebu-Mir-17-P3f-v1  Ebu-Mir-17-P4e 
Orthologues
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)		 FYBX02010694.1: 1552137-1552201 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1e)		 Mir-17-P1e FYBX02010694.1: 1552137-1552201 [+] UCSC Ensembl
Mir-17-P2e FYBX02010694.1: 1552447-1552509 [+] UCSC Ensembl
Mir-17-P3e FYBX02010694.1: 1552582-1552644 [+] UCSC Ensembl
Mir-17-P4e FYBX02010694.1: 1553249-1553308 [+] UCSC Ensembl
Mir-19-P2e FYBX02010694.1: 1553451-1553512 [+] UCSC Ensembl
Mir-92-P1e FYBX02010694.1: 1553862-1553920 [+] UCSC Ensembl
Mir-92-P2e FYBX02010694.1: 1554002-1554063 [+] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
ACCCUGAUCACCUACCUGCCUGUGCUGAGCCAAAGUGCUGCUAUUGCAGGUAGUAGAAACGUGUUCUGAUCUACUGCAAUGGCGGCACUUGUGGCUUUGUGCAGGUCCUUUUCUUCAUUCAAACG
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Structure
        10          20        30         40        50        60  
ACCCUGAUCACCUACCU--     UG U      -|                G   UAGAAACG 
                   GCCUG  C GAGCCA AAGUGCUGCUAUUGCAG UAG        \
                   UGGAC  G UUCGGU UUCACGGCGGUAACGUC AUC        U
GCAAACUUACUUCUUUUCC     GU U      G^                -   UAGUCUUG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ebu-Mir-17-P1e_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUGCUAUUGCAGGUAG -23
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Co-mature sequence

Ebu-Mir-17-P1e_3p
mirBase accessionNone
Sequence 
42- ACUGCAAUGGCGGCACUUGUGGC -65
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