Mir-92-P1e

MirGeneDB ID

Ebu-Mir-92-P1e

Family name

MIR-92 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-92-P2e Ebu-Mir-92-P2f

Orthologues

Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02010694.1: 1553862-1553920 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1e)

Mir-17-P1e FYBX02010694.1: 1552137-1552201 [+] UCSC Ensembl
Mir-17-P2e FYBX02010694.1: 1552447-1552509 [+] UCSC Ensembl
Mir-17-P3e FYBX02010694.1: 1552582-1552644 [+] UCSC Ensembl
Mir-17-P4e FYBX02010694.1: 1553249-1553308 [+] UCSC Ensembl
Mir-19-P2e FYBX02010694.1: 1553451-1553512 [+] UCSC Ensembl
Mir-92-P1e FYBX02010694.1: 1553862-1553920 [+] UCSC Ensembl
Mir-92-P2e FYBX02010694.1: 1554002-1554063 [+] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GGGGUUCUUGGUUGAUGUCCCGCCCUGCUAAGGCCUGGAUUGGCUGCAAUGCAUGUGUGUUCAUUUGUAUUGCACUUGUCCCGGCCUCUGUGGGGGUGUUGGGAACUUUCCCACAUCCC

Get precursor sequence

Structure

        10        20          30        40        50         
GGGGUUCUUGGUUGAUGUCCCG--|  UG UA     U    U  C         UGUGU 
                        CCC  C  AGGCC GGAU GG UGCAAUGCA     G
                        GGG  G  UCCGG CCUG UC ACGUUAUGU     U
CCCUACACCCUUUCAAGGGUUGUG^  GU UC     C    U  -         UUACU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Ebu-Mir-92-P1e_5p* (predicted)

mirBase accession

None

Sequence

0- AGGCCUGGAUUGGCUGCAAUGCA -23

Get sequence

Mature sequence

Ebu-Mir-92-P1e_3p

mirBase accession

None

Sequence

37- UAUUGCACUUGUCCCGGCCUCU -59

Get sequence