MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-542

Family name MIR-542 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-542
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mml-Mir-542-v1  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-450-P3 CM009179.1: 111015235-111015292 [-] UCSC Ensembl
Mir-450-P2 CM009179.1: 111015405-111015461 [-] UCSC Ensembl
Mir-450-P1 CM009179.1: 111015538-111015594 [-] UCSC Ensembl
Mir-542-v1 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Mir-15-P2c CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Mir-15-P1c CM009179.1: 111021472-111021530 [-] UCSC Ensembl
Variant

Eca-Mir-542-v1
Seed GUGACAG
Precursor
(pre-Mir +30nt flank)		 
AGAAAUUUUGAGUCAAGGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCAUUCAUCCUCAUGGCAAU
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Structure
        10        20          30        40        50         
AGAAAUUUUGAGUCAAGGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UAACGGUACUCCUACUUACCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-542-v1_5p*
mirBase accessionMIMAT0013237
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
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Mature sequence

Eca-Mir-542-v1_3p
mirBase accessionMIMAT0013238
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
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Variant

Eca-Mir-542-v2
Seed AUUAGUA
Precursor
(pre-Mir +30nt flank)		 
CCACCCUGAGCCAUGUCAUGUGCAGUGCCCUGCCGGGAAGGUACUGAUCACUUAGCAUAUGUGUAAUUAGUACCUGUCCGGGUAGAGUAAUGCUCAAGAAGACCAUCAUUUUUGGA
Get precursor sequence
Structure
        10          20        30         40        50       
CCACCCUGAGCCAUGUCA--  U   G   C     G   -|         C  UUAGC 
                    UG GCA UGC CUGCC GGA AGGUACUGAU AC     \
                    AC CGU AUG GAUGG CCU UCCAUGAUUA UG     A
AGGUUUUUACUACCAGAAGA  U   A   A     G   G^         A  UGUAU 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-542-v2_5p*
mirBase accessionMIMAT0013237
Sequence 
0- UGCCGGGAAGGUACUGAUCAC -21
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Mature sequence

Eca-Mir-542-v2_3p
mirBase accessionMIMAT0013238
Sequence 
34- AAUUAGUACCUGUCCGGGUAGA -56
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