MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-542

Family name MIR-542 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Eca-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mml-Mir-542-v1  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054702.2: 140562939-140562997 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542)		 Mir-450-P3 CM054702.2: 140561771-140561828 [-] UCSC Ensembl
Mir-450-P2 CM054702.2: 140561930-140561986 [-] UCSC Ensembl
Mir-450-P1 CM054702.2: 140562101-140562158 [-] UCSC Ensembl
Mir-542 CM054702.2: 140562939-140562997 [-] UCSC Ensembl
Mir-15-P2c CM054702.2: 140567917-140567979 [-] UCSC Ensembl
Mir-15-P1c CM054702.2: 140568229-140568287 [-] UCSC Ensembl
Seed GUGACAG
Precursor
(pre-Mir +30nt flank)		 
UCGGUCAAGGAUGCACAGAUCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCAGUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCGUAGCAAA
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Structure
        10          20        30        40        50         
UCGGUCAAGGAUGCACAGA--|       AUC    GG    UCA         AUACCA 
                     UCUCAGAC   UCGG  AUCA   UGUCACGAG      \
                     AGGGUCUG   AGUC  UAGU   ACAGUGUUC      G
AAACGAUGCUUCUACUCACCG^       GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-542_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
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Mature sequence

Pab-Mir-542_3p
mirBase accessionNone
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
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