MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-1984-P2

Family name MIR-1984 (all species)
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-1984-P1 
Orthologues Esc-Mir-1984  Lgi-Mir-1984-P2  Lhy-Mir-1984  Mgi-Mir-1984-P2  Npo-Mir-1984  Pve-Mir-1984-P2  Rph-Mir-1984-P2 
Node of Origin (locus) Gastropoda + Bivalvia + Scaphopoda
Node of Origin (family) Conchifera
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000013.1: 5718775-5718831 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1984-P2)		 Mir-1984-P2 JALGQA010000013.1: 5718775-5718831 [-] UCSC Ensembl
Mir-1984-P1 JALGQA010000013.1: 5722214-5722269 [-] UCSC Ensembl
Seed GCCAUUU
Precursor
(pre-Mir +30nt flank)		 
ACAGAGCAAGAUGUGUCUUGUGGUGUGCCAUGCCAUUUUUAUCAGUCACUGUGUUCGAAAACUCGCAGUGUCGAUGACAAUGGCCUGAUAAUCCACUCACCCCAACAUUCUCCAGUC
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Structure
        10          20        30        40        50        
ACAGAGCAAGAUGUGUCUU--|   UG  C  U      U     AGU       UUCG 
                     GUGG  UG CA GCCAUU UUAUC   CACUGUG    A
                     CACC  AU GU CGGUAA AGUAG   GUGACGC    A
CUGACCUCUUACAACCCCACU^   UA  A  C      C     CU-       UCAA 
     110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Mature sequence

Hru-Mir-1984-P2_5p
mirBase accessionNone
Sequence 
0- UGCCAUUUUUAUCAGUCACUGUG -23
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Star sequence

Hru-Mir-1984-P2_3p*
mirBase accessionNone
Sequence 
35- CAGUGUCGAUGACAAUGGCCUG -57
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