MirGeneDB 3.0
MirGeneDB ID

Hru-Mir-1984-P1

Family name MIR-1984 (all species)
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-1984-P2 
Orthologues Esc-Mir-1984  Lgi-Mir-1984-P1  Lhy-Mir-1984  Mgi-Mir-1984-P1  Npo-Mir-1984  Pve-Mir-1984-P1  Rph-Mir-1984-P1 
Node of Origin (locus) Gastropoda + Bivalvia + Scaphopoda
Node of Origin (family) Conchifera
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)		 JALGQA010000013.1: 5722214-5722269 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1984-P1)		 Mir-1984-P2 JALGQA010000013.1: 5718775-5718831 [-] UCSC Ensembl
Mir-1984-P1 JALGQA010000013.1: 5722214-5722269 [-] UCSC Ensembl
Seed GCCCUAU
Precursor
(pre-Mir +30nt flank)		 
GUUUUUAAAAUGGCGUUGUGCCUCACGUUGUGCCCUAUCCGUCAGGAACUGUGUGUGAUUCCCACAGUGUCUGUGGAUACGGCCCAUCGUUUGGCACUCCCUCAUCCCGACAACCA
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Structure
        10          20        30        40        50        
GUUUUUAAAAUGGCGUU--|    UC   U  U   C      U   GA      UGUG 
                   GUGCC  ACG UG GCC UAUCCG CAG  ACUGUG    \
                   CACGG  UGC AC CGG AUAGGU GUC  UGACAC    A
ACCAACAGCCCUACUCCCU^    UU   U  C   C      -   UG      CCUU 
    110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Mature sequence

Hru-Mir-1984-P1_5p
mirBase accessionNone
Sequence 
0- UGCCCUAUCCGUCAGGAACUGUG -23
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Star sequence

Hru-Mir-1984-P1_3p*
mirBase accessionNone
Sequence 
34- CAGUGUCUGUGGAUACGGCCCA -56
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