MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1984-P1

Family name MIR-1984 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-1984-P2 
Orthologues Esc-Mir-1984  Hru-Mir-1984-P1  Lgi-Mir-1984-P1  Lhy-Mir-1984  Npo-Mir-1984  Pve-Mir-1984-P1  Rph-Mir-1984-P1 
Node of Origin (locus) Gastropoda + Bivalvia + Scaphopoda
Node of Origin (family) Conchifera
Genome context
(CGI_GCA_000297895.1)		 scaffold339: 59463-59521 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1984-P1)		 Mir-1984-P1 scaffold339: 59463-59521 [+] Ensembl
Mir-1984-P2 scaffold339: 60097-60155 [+] Ensembl
Seed GCCCUAU
Precursor
(pre-Mir +30nt flank)		 
UUUCAUUUGUUACUUACACACGGGACGGCAUGCCCUAUCCGUCAGUCGCUGCCUCGUUUUGAAUAGCAGGGACUGUCGAAUGGGAUUUGCUGUCUCGGGUCGCUCUUCAGUCGUAUUUU
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Structure
        10        20          30        40        50         
UUUCAUUUGUUACUUACACA--|         UGC     C  U     G    CUCGUU 
                      CGGGACGGCA   CCUAU CG CAGUC CUGC      \
                      GCUCUGUCGU   GGGUA GC GUCAG GACG      U
UUUUAUGCUGACUUCUCGCUGG^         UUA     A  U     G    AUAAGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-1984-P1_5p
mirBase accessionNone
Sequence 
0- UGCCCUAUCCGUCAGUCGCUGC -22
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Star sequence

Mgi-Mir-1984-P1_3p*
mirBase accessionNone
Sequence 
37- AGGGACUGUCGAAUGGGAUUUG -59
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