Mir-1788

MirGeneDB ID

Mal-Mir-1788

Family name

MIR-1788 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-1788 Ami-Mir-1788 Cli-Mir-1788 Cmi-Mir-1788 Cpi-Mir-1788 Dre-Mir-1788 Ebu-Mir-1788 Gga-Mir-1788 Gja-Mir-1788 Gmo-Mir-1788 Lch-Mir-1788 Loc-Mir-1788 Mun-Mir-1788 Pbv-Mir-1788 Pma-Mir-1788 Spt-Mir-1788 Sto-Mir-1788 Tgu-Mir-1788 Tni-Mir-1788 Xla-Mir-1788-P1 Xla-Mir-1788-P2 Xtr-Mir-1788

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884776.1: 34824-34881 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1788)

Mir-375-P2 KV884776.1: 22136-22193 [+] UCSC Ensembl
Mir-1788 KV884776.1: 34824-34881 [+] UCSC Ensembl

Seed

AGGCAGC

Precursor
(pre-Mir +30nt flank)

CACUCCGUCGGUGACACAGUCUAGCAUUCGAGGCUUGUUUUAAGUUGCCUGCGACUCAUAUUGGACACAGGCAGCUAAAGCAAGUCUGGGACGCCAGAGACACAUCAACGAGCCCAGC

Get precursor sequence

Structure

        10         20        30        40        50         
CACUCCGUCGGUGACACAG-|  A  A   G            A        CGACUCA 
                    UCU GC UUC AGGCUUGUUUUA GUUGCCUG       U
                    AGA CG AGG UCUGAACGAAAU CGACGGAC       A
CGACCCGAGCAACUACACAG^  C  C   G            -        ACAGGUU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-1788_5p*

mirBase accession

None

Sequence

0- AGGCUUGUUUUAAGUUGCCUGCG -23

Get sequence

Mature sequence

Mal-Mir-1788_3p

mirBase accession

None

Sequence

37- CAGGCAGCUAAAGCAAGUCUG -58

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