| MirGeneDB ID | Spt-Mir-1788 |
|---|---|
| Family name | MIR-1788 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1788 Ami-Mir-1788 Cli-Mir-1788 Cmi-Mir-1788 Cpi-Mir-1788 Dre-Mir-1788 Ebu-Mir-1788 Gga-Mir-1788 Gja-Mir-1788 Gmo-Mir-1788 Lch-Mir-1788 Loc-Mir-1788 Mal-Mir-1788 Mun-Mir-1788 Pbv-Mir-1788 Pma-Mir-1788 Sto-Mir-1788 Tgu-Mir-1788 Tni-Mir-1788 Xla-Mir-1788-P1 Xla-Mir-1788-P2 Xtr-Mir-1788 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014018.1: 10535-10593 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-1788) |
Mir-1788
QEPC01014018.1: 10535-10593 [-]
UCSC
Ensembl
Mir-375 QEPC01014018.1: 42760-42817 [-] UCSC Ensembl |
| Seed | AGGCAGC |
| Precursor (pre-Mir +30nt flank) |
AGCCUCACCCCCGCCCCCCUCUGUGCCCCAGGCUUGUUUUCAGUUGCCUGCGGCUGGUUAGGAUGACUCAGGCAGCUAAAGCAAGUCUGGGACAUGAGGGGCACUCGCUGUAGAGGGAGGet precursor sequence |
| Structure | 10 20 30 40 50 AGCCUCACCCCCGCCCC---| U C C CGGCUGGU CCUC GUG CCCAGGCUUGUUUU AGUUGCCUG U GGAG UAC GGGUCUGAACGAAA UCGACGGAC A GAGGGAGAUGUCGCUCACGG^ - A - UCAGUAGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Spt-Mir-1788_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGCUUGUUUUCAGUUGCCUGCG -22
Get sequence
|
| Mature sequence | Spt-Mir-1788_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- CAGGCAGCUAAAGCAAGUCUG -59
Get sequence
|
