MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-1788

Family name MIR-1788 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1788  Ami-Mir-1788  Cli-Mir-1788  Cmi-Mir-1788  Cpi-Mir-1788  Dre-Mir-1788  Ebu-Mir-1788  Gga-Mir-1788  Gja-Mir-1788  Gmo-Mir-1788  Lch-Mir-1788  Loc-Mir-1788  Mal-Mir-1788  Mun-Mir-1788  Pbv-Mir-1788  Pma-Mir-1788  Spt-Mir-1788  Sto-Mir-1788  Tgu-Mir-1788  Xla-Mir-1788-P1  Xla-Mir-1788-P2  Xtr-Mir-1788 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 2: 17694044-17694101 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1788)		 Mir-1788 2: 17694044-17694101 [-] UCSC Ensembl
Mir-375-P2 2: 17702703-17702760 [-] UCSC Ensembl
Seed GCUUGUU
Precursor
(pre-Mir +30nt flank)		 
UCACAUUGGUAGACACAGUCAGGCUUUCCAGGCUUGUUUUAAGUUGCCUGCGACUUGUAUUUGGACACAGGCAGCUAAAGCAAGUCUGGGACGCCACAGACACACCCUCAACCCCCGA
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Structure
        10        20          30        40        50         
UCACAUUGGUAGACACAGUCA--|  U                A        CGACUUGU 
                       GGC UUCCAGGCUUGUUUUA GUUGCCUG        \
                       CCG AGGGUCUGAACGAAAU CGACGGAC        A
AGCCCCCAACUCCCACACAGACA^  C                -        ACAGGUUU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sp Sp Sp To
Mature sequence

Tni-Mir-1788_5p
mirBase accessionNone
Sequence 
0- GGCUUGUUUUAAGUUGCCUGCG -22
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Star sequence

Tni-Mir-1788_3p*
mirBase accessionNone
Sequence 
37- CAGGCAGCUAAAGCAAGUCUG -58
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