| MirGeneDB ID | Ocu-Mir-7180 |
|---|
| Family name |
MIR-7180 (all species) |
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| Species |
Rabbit (Oryctolagus cuniculus) |
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| MiRBase ID |
ocu-mir-7180
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-7180
Cfa-Mir-7180
Cja-Mir-7180
Dno-Mir-7180
Mml-Mir-7180
Pab-Mir-7180
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(oryCun2_add) |
chr16: 22502775-22502832 [-]
UCSC
Ensembl
|
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| Seed |
GUGGCCU |
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Precursor
(pre-Mir +30nt flank) |
GAGGCUGUCUGAGGACUGGUGGUCUCAGGGAGUGUACUUCCUGGGGCCUCUGGGUAUAUAAUUCCUGUGGCCUCUGGGUGUGUACCCUCUGUGGCUUCCAAGGUCAUACUUCCUGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGGCUGUCUGAGGACU--| U U A U U UCU GUAU
GG GGUC CAGGG GUGUAC UCC GGGGCC GG A
CC UCGG GUCUC CAUGUG GGG CUCCGG CC U
GACGUCCUUCAUACUGGAA^ U U C U U UGU UUAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Ocu-Mir-7180_5p* |
| mirBase accession | MIMAT0048615 |
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| Sequence |
0- AGUGUACUUCCUGGGGCCUCUGG -23
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-7180_3p |
| mirBase accession | MIMAT0048616 |
|---|
| Sequence |
35- UGUGGCCUCUGGGUGUGUACCCU -58
Get sequence
|
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