| MirGeneDB ID | Pab-Mir-590 |
|---|
| Family name |
MIR-590 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bta-Mir-590
Cfa-Mir-590
Dno-Mir-590
Eca-Mir-590
Hsa-Mir-590
Mml-Mir-590
Mmr-Mir-590
Oan-Mir-590
Ocu-Mir-590
|
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| Node of Origin (locus) |
Mammalia
|
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| Node of Origin (family) |
Mammalia
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054685.2: 14329021-14329081 [-]
UCSC
Ensembl
|
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| Seed |
AAUUUUA |
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Precursor
(pre-Mir +30nt flank) |
UUCUUAAAAGUCCUGUAGCCAGUCAGAAAUGAGCUUAUUCAUAAAAGUGCAGUAUGGUGGAGUCAAUCUGUAAUUUUAUGUAUAAGCUAGUCUCUGAUUGAAACGUGCAGCAGCUGUCUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUUAAAAGUCCUGUAGC--| A G U G UAUGGUG
CAGUCAGA AU AGCUUAU CAUAAAA UGCAG \
GUUAGUCU UG UCGAAUA GUAUUUU AUGUC G
CUUCUGUCGACGACGUGCAAA^ C A U A UAACUGA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-590_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAGCUUAUUCAUAAAAGUGCAG -22
Get sequence
|
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| Mature sequence |
Pab-Mir-590_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UAAUUUUAUGUAUAAGCUAGU -61
Get sequence
|
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