MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-187

Family name MIR-187 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-187
Paralogues
Orthologues Aca-Mir-187  Ami-Mir-187  Bta-Mir-187  Cfa-Mir-187  Cja-Mir-187  Cpi-Mir-187  Cpo-Mir-187  Dno-Mir-187  Dre-Mir-187  Eca-Mir-187  Ete-Mir-187  Gga-Mir-187  Gja-Mir-187  Gmo-Mir-187  Hsa-Mir-187  Laf-Mir-187  Lch-Mir-187  Loc-Mir-187  Mal-Mir-187  Mdo-Mir-187  Mml-Mir-187  Mmr-Mir-187  Mmu-Mir-187  Mun-Mir-187  Neu-Mir-187  Oan-Mir-187  Ocu-Mir-187  Pab-Mir-187  Rno-Mir-187  Sha-Mir-187  Spt-Mir-187  Tgu-Mir-187  Tni-Mir-187  Xtr-Mir-187 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(colLiv2)		 scaffold231: 68271-68328 [+]
Clustered miRNAs
(< 50kb from Mir-187)		 Mir-187 scaffold231: 68271-68328 [+]
Mir-1677-P6 scaffold231: 75600-75657 [+]
Seed CGUGUCU
Precursor
(pre-Mir +30nt flank)		 
GGGUUUGCUCUAAACUAUUGUGAGACCUCCGGCUACAACACAGGACAUGGGAGCUUUUCUGAACCCUCGUGUCUUGUGUUGCAGCCAGAGGGGCACAUCUUUUCAACCCAGUCUGAGA
Get precursor sequence
Structure
        10           20        30        40        50        
GGGUUUGCUCUAAACUAU---|   AGA    C    A                AGCUUU 
                     UGUG   CCUC GGCU CAACACAGGACAUGGG      U
                     ACAC   GGAG CCGA GUUGUGUUCUGUGCUC      C
AGAGUCUGACCCAACUUUUCU^   GG-    A    C                CCAAGU 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on the 5p arm. The 3' end of the 3p arm is also likely monoadenylated when not monouridylated despite the templated adenosine.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-187_5p*
mirBase accessionMIMAT0038562
Sequence 
0- GGCUACAACACAGGACAUGGGA -22
Get sequence
Mature sequence

Cli-Mir-187_3p
mirBase accessionMIMAT0038563
Sequence 
36- UCGUGUCUUGUGUUGCAGCCAG -58
Get sequence