Mir-92-P2a

MirGeneDB ID

Gja-Mir-92-P2a

Family name

MIR-92 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-92-P1a Gja-Mir-92-P1c Gja-Mir-92-P1d Gja-Mir-92-P2c

Orthologues

Aca-Mir-92-P2a Ami-Mir-92-P2a Asu-Mir-92 Bfl-Mir-92-o2 Bla-Mir-92-o2 Bta-Mir-92-P2a Cel-Mir-92 Cfa-Mir-92-P2a Cja-Mir-92-P2a Cli-Mir-92-P2a Cmi-Mir-92-P2a Cpi-Mir-92-P2a Cpo-Mir-92-P2a Dno-Mir-92-P2a Eca-Mir-92-P2a Esc-Mir-92 Ete-Mir-92-P2a Gga-Mir-92-P2a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P2a Isc-Mir-92 Laf-Mir-92-P2a Mdo-Mir-92-P2a Mml-Mir-92-P2a Mmr-Mir-92-P2a Mmu-Mir-92-P2a Mun-Mir-92-P2a Neu-Mir-92-P2a Oan-Mir-92-P2a Obi-Mir-92 Ocu-Mir-92-P2a Pab-Mir-92-P2a Rno-Mir-92-P2a Sha-Mir-92-P2a Sme-Mir-92 Spt-Mir-92-P2a Sto-Mir-92-P2a Tgu-Mir-92-P2a Xla-Mir-92-P2a Xtr-Mir-92-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015166434.1: 931208-931267 [+]

Clustered miRNAs
(< 50kb from Mir-92-P2a)

Mir-430-P3 NW_015166434.1: 930789-930847 [+]
Mir-92-P2a NW_015166434.1: 931208-931267 [+]

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

AGCGGAUAUGUACUUUUGCUAUUAUCCUUUACUGUUGCUAAUAUGCAACUCUGUGGCAUAAAAUCUGGAAUUGCACUUUAGCAAUGGUGAUGGAUUAUAAGCUAUGCAAAAAGUUACCAU

Get precursor sequence

Structure

        10          20        30        40        50         
AGCGGAUAUGUACUUUU-  -|  U    U             UA     C   GUGGCA 
                  GC UAU AUCC UUACUGUUGCUAA  UGCAA UCU      U
                  CG AUA UAGG AGUGGUAACGAUU  ACGUU AGG      A
UACCAUUGAAAAACGUAU  A^  U    U             UC     A   UCUAAA 
.       110       100        90        80        70        60

Deep sequencing

3' NTU

Unknown

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

To

Star sequence

Gja-Mir-92-P2a_5p* (predicted)

mirBase accession

None

Sequence

0- ACUGUUGCUAAUAUGCAACUCU -22

Get sequence

Mature sequence

Gja-Mir-92-P2a_3p (predicted)

mirBase accession

None

Sequence

38- AAUUGCACUUUAGCAAUGGUGA -60

Get sequence