| MirGeneDB ID | Lch-Mir-27-P4 |
|---|---|
| Family name | MIR-27 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-27-P1 Lch-Mir-27-P2 Lch-Mir-27-P3 |
| Orthologues | Cmi-Mir-27-P4 Dre-Mir-27-P4a Gmo-Mir-27-P4a Gmo-Mir-27-P4b Loc-Mir-27-P4 Mal-Mir-27-P4a Mal-Mir-27-P4b Sto-Mir-27-P4 Tni-Mir-27-P4a Tni-Mir-27-P4b Xla-Mir-27-P4c Xla-Mir-27-P4d Xtr-Mir-27-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127091.1: 1152893-1152956 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-27-P4) |
Mir-24-P4
JH127091.1: 1152354-1152413 [-]
Ensembl
Mir-27-P4 JH127091.1: 1152893-1152956 [-] Ensembl Mir-23-P4 JH127091.1: 1154085-1154147 [-] Ensembl |
| Seed | UCACAGU |
| Precursor (pre-Mir +30nt flank) |
CUCCCACAGCAGAUCUCUUUGAAAUGGCACAGAGCUUAGCUAUAUGGAGAGCAGUGUAUCUGUCAGUAUCUUGUUCACAGUGGCUAAGUUUAGUGCCCAAAGAGAGAAAAGGAGUGGGUAGUGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUCCCACAGCAGAUCUCUUUGAAAU--| A A GA GUGUAUCU GGCAC GAGCUUAGCUAU UG GAGCA G CCGUG UUUGAAUCGGUG AC CUUGU U UGUGAUGGGUGAGGAAAAGAGAGAAAC^ A - A- UCUAUGAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Lch-Mir-27-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGAGCUUAGCUAUAUGGAGAGCA -23
Get sequence
|
| Mature sequence | Lch-Mir-27-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
43- UUCACAGUGGCUAAGUUUAGU -64
Get sequence
|
