MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-27-P4b

Family name MIR-27 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-27-P1  Tni-Mir-27-P2b  Tni-Mir-27-P3  Tni-Mir-27-P4a 
Orthologues Cmi-Mir-27-P4  Gmo-Mir-27-P4b  Lch-Mir-27-P4  Loc-Mir-27-P4  Mal-Mir-27-P4b  Sto-Mir-27-P4  Xtr-Mir-27-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15_random: 2810064-2810128 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4b)		 Mir-27-P4b 15_random: 2810064-2810128 [+] UCSC Ensembl
Mir-24-P4b 15_random: 2810523-2810582 [+] UCSC Ensembl
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)		 
UGUCUUCCUGGACUCACUUUUCUAAAGACACAGGACUUAGCUCAUUAGUGAGCAUGGGAACCAAUCACAGAUUGUUCACAGUGGCUAAGUUCAGUGUCUGACAUGAAAGAAUGAACUCGAGCGUG
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Structure
        10        20          30        40        50        60   
UGUCUUCCUGGACUCACUU   UAA--|     A         U    A      AUGGGAACC 
                   UUC     AGACAC GGACUUAGC CAUU GUGAGC         A
                   AAG     UCUGUG CUUGAAUCG GUGA CACUUG         A
GUGCGAGCUCAAGUAAGA-   UACAG^     A         -    -      UUAGACACU 
   120       110        100        90         80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-27-P4b_5p*
mirBase accessionNone
Sequence 
0- CAGGACUUAGCUCAUUAGUGAGC -23
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Mature sequence

Tni-Mir-27-P4b_3p
mirBase accessionNone
Sequence 
44- UUCACAGUGGCUAAGUUCAGU -65
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