MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-24-P4b

Family name MIR-24 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-24-P1  Tni-Mir-24-P2b  Tni-Mir-24-P3  Tni-Mir-24-P4a 
Orthologues Gmo-Mir-24-P4b  Lch-Mir-24-P4  Loc-Mir-24-P4  Mal-Mir-24-P4b  Sto-Mir-24-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15_random: 2810523-2810582 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P4b)		 Mir-27-P4b 15_random: 2810064-2810128 [+] UCSC Ensembl
Mir-24-P4b 15_random: 2810523-2810582 [+] UCSC Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)		 
AUGUUUUUGACUGUUUGAAGUUUUACUCUUGUGCCUACUGAACUGGAUUCAGUGUGUUUGUGUAAAACUGGCUCAGUCCAGCAGGAACAAGAGUGACAACUAAUGUGACGGCAGCAGGAC
Get precursor sequence
Structure
        10         20         30        40        50          
AUGUUUUUGACUGUUUGA-    -|         G   A   A     AU     GUGUUU 
                   AGUU UUACUCUUGU CCU CUG ACUGG  UCAGU      \
                   UCAA AGUGAGAACA GGA GAC UGACU  GGUCA      G
CAGGACGACGGCAGUGUAA    C^         A   C   C     C-     AAAUGU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-24-P4b_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAACUGGAUUCAGUG -24
Get sequence
Mature sequence

Tni-Mir-24-P4b_3p
mirBase accessionNone
Sequence 
38- UGGCUCAGUCCAGCAGGAACAA -60
Get sequence