Mir-24-P4a

MirGeneDB ID

Tni-Mir-24-P4a

Family name

MIR-24 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-24-P1 Tni-Mir-24-P2b Tni-Mir-24-P3 Tni-Mir-24-P4b

Orthologues

Dre-Mir-24-P4a Gmo-Mir-24-P4a Lch-Mir-24-P4 Loc-Mir-24-P4 Mal-Mir-24-P4a Sto-Mir-24-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

1: 16060478-16060537 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-24-P4a)

Mir-23-P4a 1: 16058804-16058867 [+] UCSC Ensembl
Mir-27-P4a 1: 16059190-16059253 [+] UCSC Ensembl
Mir-24-P4a 1: 16060478-16060537 [+] UCSC Ensembl

Seed

GGCUCAG

Precursor
(pre-Mir +30nt flank)

CCAUCGCUCACGUCUGGGUUGUGCCCUCCUGUGCCUACUGAACUGGUAUCAGUGUUUUACUGGAAAACUGGCUCAGUUCAGCAGGAACAGGAGUGCAGCCUUUUCUCCGUCAGGAUCCAA

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Structure

        10            20        30        40        50          
CCAUCGCUCACGUCUGG----|   UG CC      G   A         UA   GUGUUUUA 
                     GUUG  C  UCCUGU CCU CUGAACUGG  UCA        \
                     CGAC  G  AGGACA GGA GACUUGACU  GGU        C
AACCUAGGACUGCCUCUUUUC^   GU --      A   C         C-   CAAAAGGU 
.       110       100          90        80         70

Deep sequencing

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Comment

There are Drosha cuts -1 and +1 on the 5p arm.

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-24-P4a_5p*

mirBase accession

None

Sequence

0- GUGCCUACUGAACUGGUAUCA -21

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Mature sequence

Tni-Mir-24-P4a_3p

mirBase accession

None

Sequence

38- UGGCUCAGUUCAGCAGGAACAG -60

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