Mir-23-P4a

MirGeneDB ID

Tni-Mir-23-P4a

Family name

MIR-23 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-23a-1

Paralogues

Tni-Mir-23-P1 Tni-Mir-23-P2b Tni-Mir-23-P3

Orthologues

Cmi-Mir-23-P4 Dre-Mir-23-P4a Gmo-Mir-23-P4a Lch-Mir-23-P4 Loc-Mir-23-P4 Mal-Mir-23-P4a Sto-Mir-23-P4 Xtr-Mir-23-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

1: 16058804-16058867 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P4a)

Mir-23-P4a 1: 16058804-16058867 [+] UCSC Ensembl
Mir-27-P4a 1: 16059190-16059253 [+] UCSC Ensembl
Mir-24-P4a 1: 16060478-16060537 [+] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

GACGUUCCGGCCCUGUGGCUGUGGCGGGGAGGGUUCCUGGCACCGUGAUUUGAUGCACAAAGACAAACAAAAAUCACAUUGCCAGGGAUUUCCACCCUUUCACAGCUCAGCAGGUGAACAUCCU

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Structure

        10         20        30          40        50        60 
GACGUUCCGGCCCUGUG-       C    A  --|         CC       GAUGCACAA 
                  GCUGUGG GGGG GG  GUUCCUGGCA  GUGAUUU         \
                  CGACACU UCCC CC  UAGGGACCGU  CACUAAA         A
UCCUACAAGUGGACGACU       U    A  UU^         UA       AACAAACAG 
  120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-23-P4a_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCACCGUGAUUU -21

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Mature sequence

Tni-Mir-23-P4a_3p

mirBase accession

MIMAT0002913

Sequence

42- AUCACAUUGCCAGGGAUUUCCA -64

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