MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-23-P4

Family name MIR-23 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-23a-2
Paralogues Xtr-Mir-23-P2  Xtr-Mir-23-P3 
Orthologues Cmi-Mir-23-P4  Dre-Mir-23-P4a  Gmo-Mir-23-P4a  Lch-Mir-23-P4  Loc-Mir-23-P4  Mal-Mir-23-P4a  Sto-Mir-23-P4  Tni-Mir-23-P4a  Xla-Mir-23-P4c  Xla-Mir-23-P4d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr4: 73605123-73605184 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P4)		 Mir-23-P4 chr4: 73605123-73605184 [+] UCSC Ensembl
Mir-27-P4 chr4: 73605412-73605473 [+] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
GUGACUCUAUUUUUCACUCUGUGGCUGGUAGGAUUCCUGGCAGAGUGAUUUGGAAAUGUAUGGUACAAAAUCACAUUGCCAGGGAUUUCCAAUCAGUCCCGGGCCAAUCAUCCUCCUCUUGC
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Structure
        10          20        30          40        50         
GUGACUCUAUUUUUCAC--    U       A   --|         A       GGAAAUG 
                   UCUG GGCUGGU GGA  UUCCUGGCAG GUGAUUU       U
                   GGGC CUGACUA CCU  AGGGACCGUU CACUAAA       A
CGUUCUCCUCCUACUAACC    C       A   UU^         A       ACAUGGU 
120       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-23-P4_5p*
mirBase accessionNone
Sequence 
0- GGAUUCCUGGCAGAGUGAUUU -21
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Mature sequence

Xtr-Mir-23-P4_3p
mirBase accessionMIMAT0003568
Sequence 
39- AUCACAUUGCCAGGGAUUUCCAA -62
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Proposed targets TargetScanVert: xtr-miR-23a