MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-23-P4

Family name MIR-23 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-23-P1  Loc-Mir-23-P2 
Orthologues Cmi-Mir-23-P4  Dre-Mir-23-P4a  Gmo-Mir-23-P4a  Lch-Mir-23-P4  Mal-Mir-23-P4a  Sto-Mir-23-P4  Tni-Mir-23-P4a  Xla-Mir-23-P4c  Xla-Mir-23-P4d  Xtr-Mir-23-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG19: 5779627-5779689 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P4)		 Mir-23-P4 LG19: 5779627-5779689 [+] Ensembl
Mir-27-P4 LG19: 5780510-5780573 [+] Ensembl
Mir-24-P4 LG19: 5781223-5781282 [+] Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
GGUUAACCACUAGUCUGGCUGUAUCGGAGAGGGUUCCUGGCACCGUGAUUUGAUGCAAAAACAGAAACCAAAAUCACAUUGCCAGGGAUUUCCACUCUGUUACAGGUUGCUCCUUCGGGCUGU
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Structure
        10        20        30          40        50        60 
GGUUAACCACUAGUCUGG     U     A  --|         CC       GAUGCAAAA 
                  CUGUA CGGAG GG  GUUCCUGGCA  GUGAUUU         \
                  GACAU GUCUC CC  UAGGGACCGU  CACUAAA         A
UGUCGGGCUUCCUCGUUG     U     A  UU^         UA       ACCAAAGAC 
 120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-23-P4_5p*
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCACCGUGAUUU -21
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Mature sequence

Loc-Mir-23-P4_3p
mirBase accessionNone
Sequence 
42- AUCACAUUGCCAGGGAUUUCC -63
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