Mir-23-P4d

MirGeneDB ID

Xla-Mir-23-P4d

Family name

MIR-23 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-23a-2

Paralogues

Xla-Mir-23-P2c Xla-Mir-23-P2d Xla-Mir-23-P3c Xla-Mir-23-P3d Xla-Mir-23-P4c

Orthologues

Cmi-Mir-23-P4 Lch-Mir-23-P4 Loc-Mir-23-P4 Sto-Mir-23-P4 Xtr-Mir-23-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030731.1: 64137540-64137600 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P4d)

Mir-27-P4d NC_030731.1: 64137244-64137306 [-] UCSC Ensembl
Mir-23-P4d NC_030731.1: 64137540-64137600 [-] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

GUGAGUCUUUUUUUCACCCUGCAGCUGGUAGGAUUCCUGGCAGAGUGAUUUGGAUAUGUAUGGUACAAAAUCACAUUGCCAGGGAUUUCCAAUCAGUCACAGUCCAAUCGUUCUCCUUUUC

Get precursor sequence

Structure

        10         20        30          40        50         
GUGAGUCUUUUUUUCACC-   CA      A   --|         A       GGAUAUG 
                   CUG  GCUGGU GGA  UUCCUGGCAG GUGAUUU       U
                   GAC  UGACUA CCU  AGGGACCGUU CACUAAA       A
CUUUUCCUCUUGCUAACCU   AC      A   UU^         A       ACAUGGU 
 .       110       100        90        80        70        60