MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-23-P3d

Family name MIR-23 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-23-P2c  Xla-Mir-23-P2d  Xla-Mir-23-P3c  Xla-Mir-23-P4c  Xla-Mir-23-P4d 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xtr-Mir-23-P3 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NW_016694811.1: 2508063-2508127 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3d)		 Mir-23-P3d NW_016694811.1: 2508063-2508127 [+] UCSC Ensembl
Mir-27-P3d NW_016694811.1: 2508699-2508760 [+] UCSC Ensembl
Mir-24-P3d NW_016694811.1: 2508830-2508890 [+] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
GACCGGUGCCCCUUCUUGCCGCUGACAGCGGGGGAUUCCUGGAGAUGGGAUUUUAUUUUUUGCAGCCAAUAAAUCACAUUGCCAGGGAUUUCCAACUGUCGGCUGCCUGGUCAGCGCUGCACCUU
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Structure
        10          20        30        40        50        60  
GACCGGUGCCCCUUCUU--| C        CG  GG        AG   G     UAUUUUUU 
                   GC GCUGACAG  GG  AUUCCUGG  AUG GAUUU        \
                   CG CGGCUGUC  CC  UAGGGACC  UAC CUAAA        G
UUCCACGUCGCGACUGGUC^ U        AA  UU        GU   A     UAACCGAC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-23-P3d_5p*
mirBase accessionNone
Sequence 
0- GGGGAUUCCUGGAGAUGGGAUUU -23
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Mature sequence

Xla-Mir-23-P3d_3p
mirBase accessionNone
Sequence 
42- AUCACAUUGCCAGGGAUUUCCAA -65
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