MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-23-P3

Family name MIR-23 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)		 30: 3316574-3316636 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)		 Mir-23-P3 30: 3316574-3316636 [+] UCSC Ensembl
Mir-27-P3 30: 3316751-3316812 [+] UCSC Ensembl
Mir-24-P3 30: 3317000-3317059 [+] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
GACCCCCCACCCCCGCCGCUGCCGCCCGCCGGGGUUCCUGGCGAUGGGAUUUUUUACCGUUUUUGCCCAAAAUCACAUUGCCAGGGAUUUCCAACGGGCCCCAGCCCCCACCACCGCGCCAGG
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Structure
        10         20        30         40        50        60 
GACCCCCCACCCCCGCC-    CC     CC-|GG             G     UUUACCGU 
                  GCUG  GCCCG   G  GUUCCUGGCGAUG GAUUU        \
                  CGAC  CGGGC   C  UAGGGACCGUUAC CUAAA        U
GGACCGCGCCACCACCCC    CC     AAC^UU             A     ACCCGUUU 
 120       110       100        90        80        70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-23-P3_5p*
mirBase accessionNone
Sequence 
0- GGGGUUCCUGGCGAUGGGAUUU -22
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Mature sequence

Tgu-Mir-23-P3_3p
mirBase accessionNone
Sequence 
41- AUCACAUUGCCAGGGAUUUCCA -63
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