| MirGeneDB ID | Lch-Mir-24-P4 |
|---|---|
| Family name | MIR-24 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-24-P1 Lch-Mir-24-P2 Lch-Mir-24-P3 |
| Orthologues | Dre-Mir-24-P4a Gmo-Mir-24-P4a Gmo-Mir-24-P4b Loc-Mir-24-P4 Mal-Mir-24-P4a Mal-Mir-24-P4b Sto-Mir-24-P4 Tni-Mir-24-P4a Tni-Mir-24-P4b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127091.1: 1152354-1152413 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-24-P4) |
Mir-24-P4
JH127091.1: 1152354-1152413 [-]
Ensembl
Mir-27-P4 JH127091.1: 1152893-1152956 [-] Ensembl Mir-23-P4 JH127091.1: 1154085-1154147 [-] Ensembl |
| Seed | GGCUCAG |
| Precursor (pre-Mir +30nt flank) |
GGAGAACUUUUGAAUUGGCAGAGAUCUCCUGUGCCUACUGAGCUGAUAUCAGUGUGUAUGGAAAAAGCUGGCUCAGUUCAGCAGGAACAGGAGUCCAGCCUGACUGCCCUUGGAAGCCUCGet precursor sequence |
| Structure | 10 20 30 40 50 GGAGAACUUUUGAAUUGG A---| U G A UA UGUGUAU CAG GA CUCCUGU CCU CUGAGCUGA UCAG \ GUC CU GAGGACA GGA GACUUGACU GGUC G CUCCGAAGGUUCCCGUCA CGAC^ - A C C- GAAAAAG . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Lch-Mir-24-P4_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GUGCCUACUGAGCUGAUAUCAG -22
Get sequence
|
| Mature sequence | Lch-Mir-24-P4_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UGGCUCAGUUCAGCAGGAACAG -60
Get sequence
|
