MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-24-P4a

Family name MIR-24 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-24-P4b 
Orthologues Dre-Mir-24-P4a  Gmo-Mir-24-P4a  Lch-Mir-24-P4  Loc-Mir-24-P4  Sto-Mir-24-P4  Tni-Mir-24-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884817.1: 549216-549275 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P4a)		 Mir-24-P4a KV884817.1: 549216-549275 [-] UCSC Ensembl
Mir-27-P4a KV884817.1: 552481-552544 [-] UCSC Ensembl
Mir-23-P4a KV884817.1: 553132-553195 [-] UCSC Ensembl
Seed UGCCUAC
Precursor
(pre-Mir +30nt flank)		 
UCCCAAAUGAUGUCUGGGCUAUGCCCUCCCGUGCCUACUGAACUGGUAUCAGUGUUUGACCUUAAAACUGGCUCAGUUCAUCAGGAACAGGAGUGGAGCCUUCUUACUAGCAAGAACCAU
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Structure
        10            20         30        40        50          
UCCCAAAUGAUGUCUGG----|  AUG  -    C  G   AC        UA     GUUUGA 
                     GCU   CC CUCC GU CCU  UGAACUGG  UCAGU      \
                     CGA   GG GAGG CA GGA  ACUUGACU  GGUCA      C
UACCAAGAACGAUCAUUCUUC^  ---  U    A  A   CU        C-     AAAUUC 
.       110       100           90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-24-P4a_5p
mirBase accessionNone
Sequence 
0- GUGCCUACUGAACUGGUAUCAGU -23
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Star sequence

Mal-Mir-24-P4a_3p*
mirBase accessionNone
Sequence 
38- UGGCUCAGUUCAUCAGGAACAG -60
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