MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-24-P1

Family name MIR-24 (all species)
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-24-P2b  Tni-Mir-24-P3  Tni-Mir-24-P4a  Tni-Mir-24-P4b 
Orthologues Dre-Mir-24-P1  Gmo-Mir-24-P1  Lch-Mir-24-P1  Loc-Mir-24-P1  Pma-Mir-24-o1  Sto-Mir-24-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 15_random: 3093022-3093080 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P1)		 Mir-24-P1 15_random: 3093022-3093080 [-] UCSC Ensembl
Mir-27-P1 15_random: 3094204-3094266 [-] UCSC Ensembl
Mir-23-P1 15_random: 3094562-3094622 [-] UCSC Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)		 
GGCGCUGCCGGUGUUUGGGCUCAACCUCCUGUGCCUACUGAGCUGAAAACAGUCGGAUAUCAGACACUGGCUCAGUUCAGCAGGAACCGGAGUUAGGCCUUCUAGAGACAGCACCCGGG
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Structure
        10           20        30        40        50         
GGCGCUGCCGGUGUUUG---|  UC   C   U  G   A         AAA    CGGAU 
                    GGC  AAC UCC GU CCU CUGAGCUGA   CAGU     A
                    CCG  UUG AGG CA GGA GACUUGACU   GUCA     U
GGGCCCACGACAGAGAUCUU^  GA   -   C  A   C         CG-    CAGAC 
       110       100         90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsNo
Tissue expression
- +
Sp Sp Sp To
Star sequence

Tni-Mir-24-P1_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAAAACAGU -23
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Mature sequence

Tni-Mir-24-P1_3p
mirBase accessionNone
Sequence 
37- UGGCUCAGUUCAGCAGGAACCG -59
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