MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1994-P1

Family name MIR-1994 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-1994-P2 
Orthologues Agr-Mir-1994-P1  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P1  Efe-Mir-1994  Esc-Mir-1994-P1  Hru-Mir-1994-P1  Lan-Mir-1994-o1a  Lan-Mir-1994-o1b  Lgi-Mir-1994-P1  Lhy-Mir-1994-P1  Llo-Mir-1994  Mom-Mir-1994-P1  Npo-Mir-1994-P1  Obi-Mir-1994-P1  Ovu-Mir-1994-P1  Pve-Mir-1994-P1  Rph-Mir-1994-P1  War-Mir-1994-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold950: 63993-64049 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1994-P1)		 Mir-1994-P2 scaffold950: 63808-63866 [-] Ensembl
Mir-1994-P1 scaffold950: 63993-64049 [-] Ensembl
Seed GAGACAG
Precursor
(pre-Mir +30nt flank)		 
ACCCAAGCAGUUCCUAGUCACUUGUUGAUGCGGAAGGCCUCGCUUGUCUCCAUGAUUAUUUAACAUGAGACAGUGUGUCCUCCCUUGUCACGUGAUUUAUUAACAACAGUGGCGAUG
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Structure
        10             20        30        40        50         
ACCCAAGCAGUUCCUAG-----|   UUGU     C  A   CCU    U     C   AUUA 
                      UCAC    UGAUG GG AGG   CGCU GUCUC AUG    \
                      AGUG    ACUGU CC UCC   GUGA CAGAG UAC    U
GUAGCGGUGACAACAAUUAUUU^   C---     U  C   UGU    -     -   AAUU 
     110       100           90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-1994-P1_5p*
mirBase accessionNone
Sequence 
0- CGGAAGGCCUCGCUUGUCUCCAUG -24
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Mature sequence

Mgi-Mir-1994-P1_3p
mirBase accessionNone
Sequence 
35- UGAGACAGUGUGUCCUCCCUUG -57
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