| MirGeneDB ID | Npo-Mir-1994-P1 |
|---|---|
| Family name | MIR-1994 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-1994-P2 |
| Orthologues | Agr-Mir-1994-P1 Cte-Mir-1994 Dgr-Mir-1994 Eba-Mir-1994-P1 Efe-Mir-1994 Esc-Mir-1994-P1 Hru-Mir-1994-P1 Lan-Mir-1994-o1a Lan-Mir-1994-o1b Lgi-Mir-1994-P1 Lhy-Mir-1994-P1 Llo-Mir-1994 Mgi-Mir-1994-P1 Mom-Mir-1994-P1 Obi-Mir-1994-P1 Ovu-Mir-1994-P1 Pve-Mir-1994-P1 Rph-Mir-1994-P1 War-Mir-1994-P1 |
| Node of Origin (locus) | Mollusca |
| Node of Origin (family) | Lophotrochozoa |
| Genome context (GCA_018389105_NPO) |
JACATO010001148.1: 4537-4597 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-1994-P1) |
Mir-1994-P1
JACATO010001148.1: 4537-4597 [+]
Ensembl
Mir-1994-P2 JACATO010001148.1: 5202-5261 [+] Ensembl |
| Seed | GAGACAG |
| Precursor (pre-Mir +30nt flank) |
CUGACAAGGUUUACCUUAAGUCAUGGGUCAAGGGAGGCUAUGCUGUUCUGCAUGCAUGUGUUUGAAACAUGAGACAGUGUGUCCUCCCUUCAGCUGUGGCUCAGAGCUGCAGGGAGGGGAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUGACAAGGUUUACCUUA--| GUC C U G CAUGUG AGUCAUGG AAGGGAGG UAUGCUGU CU CAUG \ UCGGUGUC UUCCCUCC GUGUGACA GA GUAC U AAGGGGAGGGACGUCGAGAC^ GAC U - - AAAGUU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-1994-P1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGGAGGCUAUGCUGUUCUGCAUG -24
Get sequence
|
| Mature sequence | Npo-Mir-1994-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UGAGACAGUGUGUCCUCCCUUC -61
Get sequence
|
