MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1994-P2

Family name MIR-1994 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-1994-P1 
Orthologues Agr-Mir-1994-P2  Cte-Mir-1994  Dgr-Mir-1994  Eba-Mir-1994-P2  Efe-Mir-1994  Esc-Mir-1994-P2  Hru-Mir-1994-P2  Lan-Mir-1994-o2a  Lan-Mir-1994-o2b  Lgi-Mir-1994-P2  Llo-Mir-1994  Mom-Mir-1994-P2  Npo-Mir-1994-P2  Obi-Mir-1994-P2  Ovu-Mir-1994-P2  Pve-Mir-1994-P2a  Pve-Mir-1994-P2b  Rph-Mir-1994-P2  War-Mir-1994-P2 
Node of Origin (locus) Mollusca
Node of Origin (family) Lophotrochozoa
Genome context
(CGI_GCA_000297895.1)		 scaffold950: 63808-63866 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1994-P2)		 Mir-1994-P2 scaffold950: 63808-63866 [-] Ensembl
Mir-1994-P1 scaffold950: 63993-64049 [-] Ensembl
Seed GAGACAG
Precursor
(pre-Mir +30nt flank)		 
UAAAAUUGACAAAACAUGGCGACUGCUCUCAGGGUGGUAAUGCUGCCUACAUGGUGAGGUGACAACAUGAGACAGUGUGUCCUCCCUAAGUUUCAGAUCUAAGCCGAAUGCUGCUGAAG
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Structure
        10        20          30        40        50         
UAAAAUUGACAAAACAUGGC  -   CU-| C    U  UA      C  A    GUGAG 
                    GA CUG   CU AGGG GG  AUGCUG CU CAUG     G
                    CU GAC   GA UCCC CC  UGUGAC GA GUAC     U
GAAGUCGUCGUAAGCCGAAU  A   UUU^ A    U  UG      A  -    AACAG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-1994-P2_5p*
mirBase accessionNone
Sequence 
0- AGGGUGGUAAUGCUGCCUACAUG -23
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Mature sequence

Mgi-Mir-1994-P2_3p
mirBase accessionNone
Sequence 
37- UGAGACAGUGUGUCCUCCCUAA -59
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