| MirGeneDB ID | Npo-Mir-2-P12 |
|---|---|
| Family name | MIR-2 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | Npo-Mir-2-o45 Npo-Mir-2-o47 Npo-Mir-2-o48a Npo-Mir-2-o48b Npo-Mir-2-o49 |
| Orthologues | Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Efe-Mir-2-P12g Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12 |
| Node of Origin (locus) | Lophotrochozoa |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409697-409758 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-2-P12) |
Mir-71
JACATO010000013.1: 409153-409211 [+]
Ensembl
Mir-2-o45 JACATO010000013.1: 409573-409634 [+] Ensembl Mir-2-P12 JACATO010000013.1: 409697-409758 [+] Ensembl Mir-2-o47 JACATO010000013.1: 409822-409878 [+] Ensembl Mir-2-o48a JACATO010000013.1: 410153-410212 [+] Ensembl Mir-2-o48b JACATO010000013.1: 410351-410409 [+] Ensembl Mir-2-o49 JACATO010000013.1: 410469-410530 [+] Ensembl |
| Seed | AUCACAG |
| Precursor (pre-Mir +30nt flank) |
GGGGUGGGGGGUUGACAAGGCUGUGCGGUGCUGACCAGGUGGUUGUGAUGUGCUGAGAUCAAUGUUCAUAUCACAGCCUGCUUGGAUCAGUACAGCGCUGGCUGCUGCUGCUGCUGGGUCAAGet precursor sequence |
| Structure | 10 20 30 40 50
GGGGUGGGGGGUUGACAA- - G - -| CUGAGA
GGCU GUGC GUGCUGA CCAGGU GGUUGUGAUGUG U
UCGG CGCG CAUGACU GGUUCG CCGACACUAUAC C
AACUGGGUCGUCGUCGUCG U A A U^ UUGUAA
120 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-2-P12_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CUGACCAGGUGGUUGUGAUGUG -22
Get sequence
|
| Mature sequence | Npo-Mir-2-P12_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UAUCACAGCCUGCUUGGAUCAGUA -62
Get sequence
|
