MirGeneDB 3.0
MirGeneDB ID

Dya-Mir-960

Family name MIR-960 (all species)
Species Fruit fly (Drosophila yakuba)
MiRBase ID
Paralogues
Orthologues Dan-Mir-960  Dme-Mir-960  Dmo-Mir-960  Dsi-Mir-960 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)		 2L: 13552167-13552226 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-960)		 Mir-964-v1 2L: 13551083-13551143 [-] UCSC Ensembl
Mir-964-v2 2L: 13551084-13551142 [-] UCSC Ensembl
Mir-963 2L: 13551212-13551277 [-] UCSC Ensembl
Mir-962 2L: 13551941-13552000 [-] UCSC Ensembl
Mir-961 2L: 13552048-13552106 [-] UCSC Ensembl
Mir-960 2L: 13552167-13552226 [-] UCSC Ensembl
Mir-959-v1 2L: 13552286-13552348 [-] UCSC Ensembl
Mir-959-v2 2L: 13552287-13552347 [-] UCSC Ensembl
Seed GAGUAUU
Precursor
(pre-Mir +30nt flank)		 
CGCUUCGCCCGCGUGUUUUGUACCAGAUUCUGAGUAUUCCUGAUUGCAUAGCUUUGGCCUUUGAUUGCUAUACGGUCUGGGACACUUUUAACGUGGUAUCAAAUCUGAUUCAACCGAAGG
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Structure
        10         20         30        40        50         
CGCUUCGCCCGCGUGUU-   -|    GA  CU    A    U     C     UUUGGC 
                  UUG UACCA  UU  GAGU UUCC GAUUG AUAGC      C
                  AAC AUGGU  AA  UUCA AGGG CUGGC UAUCG      U
GGAAGCCAACUUAGUCUA   U^    GC  UU    C    U     A     UUAGUU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -2 on the 3p arm, and -1 on the 5p arm,.
3' NTU No
MotifsNo
Tissue expression
- +
He Wh
Mature sequence

Dya-Mir-960_5p
mirBase accessionNone
Sequence 
0- UGAGUAUUCCUGAUUGCAUAGC -22
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Star sequence

Dya-Mir-960_3p*
mirBase accessionNone
Sequence 
38- UAUACGGUCUGGGACACUUUUA -60
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