MirGeneDB 3.0
MirGeneDB ID

Dya-Mir-963

Family name MIR-963 (all species)
Species Fruit fly (Drosophila yakuba)
MiRBase ID
Paralogues
Orthologues Dan-Mir-963  Dme-Mir-963-v1  Dmo-Mir-963-v1  Dsi-Mir-963 
Node of Origin (locus) Drosophila
Node of Origin (family) Drosophila
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)		 2L: 13551212-13551277 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-963)		 Mir-964-v1 2L: 13551083-13551143 [-] UCSC Ensembl
Mir-964-v2 2L: 13551084-13551142 [-] UCSC Ensembl
Mir-963 2L: 13551212-13551277 [-] UCSC Ensembl
Mir-962 2L: 13551941-13552000 [-] UCSC Ensembl
Mir-961 2L: 13552048-13552106 [-] UCSC Ensembl
Mir-960 2L: 13552167-13552226 [-] UCSC Ensembl
Mir-959-v1 2L: 13552286-13552348 [-] UCSC Ensembl
Mir-959-v2 2L: 13552287-13552347 [-] UCSC Ensembl
Seed CAUCUGU
Precursor
(pre-Mir +30nt flank)		 
CACUACUGCAUUGUUCUUGGUCUAAUCUAAAACAAGGUACAUAUCAGGUUGUUUCCUAUAUUGGAUGAUCGAAACAUCUGUAUAUACCUUUGUUCCGAAUGGACGAAAGAGCAUCUUCAAGUUAUA
Get precursor sequence
Structure
        10           20        30         40        50        60   
CACUACUGCAUUGUUCUUG---|    A  UAA     -    C   U     U    CCUAUAUU 
                      GUCUA UC   AACAA GGUA AUA CAGGU GUUU        \
                      CAGGU AG   UUGUU CCAU UAU GUCUA CAAA        G
AUAUUGAACUUCUACGAGAAAG^    A  CC-     U    A   -     -    GCUAGUAG 
    120       110       100         90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
He Wh
Star sequence

Dya-Mir-963_5p*
mirBase accessionNone
Sequence 
0- AACAAGGUACAUAUCAGGUUGUUU -24
Get sequence
Mature sequence

Dya-Mir-963_3p
mirBase accessionNone
Sequence 
43- ACAUCUGUAUAUACCUUUGUUCC -66
Get sequence