MirGeneDB 3.0
MirGeneDB ID

Dya-Mir-961

Family name MIR-961 (all species)
Species Fruit fly (Drosophila yakuba)
MiRBase ID
Paralogues
Orthologues Dan-Mir-961  Dme-Mir-961  Dsi-Mir-961 
Node of Origin (locus) D. melanogaster group
Node of Origin (family) D. melanogaster group
Genome context
(Drosophila_yakuba.dyak_caf1.dna.toplevel)		 2L: 13552048-13552106 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-961)		 Mir-964-v1 2L: 13551083-13551143 [-] UCSC Ensembl
Mir-964-v2 2L: 13551084-13551142 [-] UCSC Ensembl
Mir-963 2L: 13551212-13551277 [-] UCSC Ensembl
Mir-962 2L: 13551941-13552000 [-] UCSC Ensembl
Mir-961 2L: 13552048-13552106 [-] UCSC Ensembl
Mir-960 2L: 13552167-13552226 [-] UCSC Ensembl
Mir-959-v1 2L: 13552286-13552348 [-] UCSC Ensembl
Mir-959-v2 2L: 13552287-13552347 [-] UCSC Ensembl
Seed UUGAUCA
Precursor
(pre-Mir +30nt flank)		 
AAGAAAAUCUAAUUCAUGGGUCGAGUUACCAUUGAUCACCGGUUACUGAGGUUGUUCCUUCUUUGGCUUCGUUUUCUGGCGAUCAAAAGAACUCGACUCGACUCGAAUCCAACCAACUU
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Structure
        10           20        30        40         50         
AAGAAAAUCUAAUUCAU---|         ACCA      A    UU-  U     UGUUCC 
                    GGGUCGAGUU    UUGAUC CCGG   AC GAGGU      \
                    CUCAGCUCAA    AACUAG GGUC   UG CUUCG      U
UUCAACCAACCUAAGCUCAG^         GAA-      C    UUU  -     GUUUCU 
       110       100        90         80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
- +
He Wh
Mature sequence

Dya-Mir-961_5p
mirBase accessionNone
Sequence 
0- AUUGAUCACCGGUUACUGAGGU -22
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Star sequence

Dya-Mir-961_3p* (predicted)
mirBase accessionNone
Sequence 
37- UUCGUUUUCUGGCGAUCAAAAG -59
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