MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-875

Family name MIR-875 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584588: 10453837-10453893 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 JH584588: 10453690-10453748 [-] UCSC Ensembl
Mir-875 JH584588: 10453837-10453893 [-] UCSC Ensembl
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)		 
UACUGGUUAUAUCAUGUAGUUUAGUGGUACAAUACCUCAGUCUUAUCAGGUGUUCUAUAAAUUCACCUGCAAAAACUGAGGUUGAGUUUCACUGAACACAGGCUUCAUGUUUCUCGU
Get precursor sequence
Structure
        10          20        30        40        50        
UACUGGUUAUAUCAUGUA--|        U  AAU        CUUAU      UUCUA 
                    GUUUAGUGG AC   ACCUCAGU     CAGGUG     \
                    CAAGUCACU UG   UGGAGUCA     GUCCAC     U
UGCUCUUUGUACUUCGGACA^        U  AGU        AAAAC      UUAAA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Te Te Te To
Mature sequence

Cpi-Mir-875_5p
mirBase accessionMIMAT0037909
Sequence 
0- AAUACCUCAGUCUUAUCAGGUG -22
Get sequence
Star sequence

Cpi-Mir-875_3p*
mirBase accessionNone
Sequence 
35- CCUGCAAAAACUGAGGUUGAGU -57
Get sequence