MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-875

Family name MIR-875 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009156.1: 47139942-47139998 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 CM009156.1: 47139795-47139853 [-] UCSC Ensembl
Mir-875 CM009156.1: 47139942-47139998 [-] UCSC Ensembl
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)		 
UUUUGGAUAACUCUUAAAGUUUAGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUUAAAAUCACCUGGAAAUACUGAGGUUGCGUUUCACUGAACAUGAGCUUCGUGACUUCUGU
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Structure
        10          20        30        40        50        
UUUUGGAUAACUCUUAAA--|        U  UAU        U  A       UUCUU 
                    GUUUAGUGG AC   ACCUCAGU UU UCAGGUG     \
                    CAAGUCACU UG   UGGAGUCA AA GGUCCAC     U
UGUCUUCAGUGCUUCGAGUA^        U  CGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-875_5p (predicted)
mirBase accessionNone
Sequence 
0- UAUACCUCAGUUUUAUCAGGUG -22
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Star sequence

Eca-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
35- CCUGGAAAUACUGAGGUUGCGU -57
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