MirGeneDB 3.0
MirGeneDB ID

Mmu-Mir-875

Family name MIR-875 (all species)
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(mm10)		 chr15: 35660981-35661037 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 chr15: 35660844-35660902 [-] UCSC Ensembl
Mir-875 chr15: 35660981-35661037 [-] UCSC Ensembl
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)		 
GGUUUGGGGAAAUUCCCAGUUCUGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCAUUAAAAUCACCUGAAAAUACUGAGGCUAUGUUUCACUGAGCAUAAGCUUCAUGGAUUCCUU
Get precursor sequence
Structure
        10          20        30         40        50        
GGUUUGGGGAAAUUCCCA--|   U    U  U   -       U  A       UUCAU 
                    GUUC GUGG AC AUA CCUCAGU UU UCAGGUG     \
                    CGAG CACU UG UAU GGAGUCA AA AGUCCAC     U
UUCCUUAGGUACUUCGAAUA^   U    U  -   C       U  A       UAAAA 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Ce Ce Em Em He Ki Li Lu Ov Pa Sk Sp Te
Mature sequence

Mmu-Mir-875_5p
mirBase accessionMIMAT0004937
Sequence 
0- UAUACCUCAGUUUUAUCAGGUG -22
Get sequence
Proposed targets microrna.org: MIMAT0004937
TargetScanVert: mmu-miR-875-5p
miRDB: MIMAT0004937
Star sequence

Mmu-Mir-875_3p*
mirBase accessionMIMAT0004938
Sequence 
35- CCUGAAAAUACUGAGGCUAUGU -57
Get sequence
Proposed targets microrna.org: MIMAT0004938
TargetScanVert: mmu-miR-875-3p
miRDB: MIMAT0004938