| MirGeneDB ID | Spt-Mir-875 |
|---|---|
| Family name | MIR-875 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-875 Ami-Mir-875 Bta-Mir-875 Cfa-Mir-875 Cja-Mir-875 Cli-Mir-875 Cpi-Mir-875 Ebu-Mir-875 Eca-Mir-875 Ete-Mir-875 Gja-Mir-875 Hsa-Mir-875 Laf-Mir-875 Mdo-Mir-875 Mml-Mir-875 Mmr-Mir-875 Mmu-Mir-875 Mun-Mir-875 Oan-Mir-875 Ocu-Mir-875 Pab-Mir-875 Pbv-Mir-875 Pma-Mir-875 Rno-Mir-875 Sha-Mir-875 |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01007203.1: 2272480-2272536 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-875) |
Mir-599
QEPC01007203.1: 2272330-2272388 [-]
UCSC
Ensembl
Mir-875 QEPC01007203.1: 2272480-2272536 [-] UCSC Ensembl |
| Seed | AUACCUC |
| Precursor (pre-Mir +30nt flank) |
UGUGUUUUACGUUGUGUAGUUUUGUGGUACAAUACCUCAGUCUUAUCAGGUGUUCUAUACAUUUACCUGGAAAUACUGAGGUUGAGUUUCACUAAACACAAGCUUCAUGUUCUCUGUGet precursor sequence |
| Structure | 10 20 30 40 50 UGUGUUUUACGUUGUGUA--| U U AAU C A UUCUA GUUU GUGG AC ACCUCAGU UU UCAGGUG \ CAAA CACU UG UGGAGUCA AA GGUCCAU U UGUCUCUUGUACUUCGAACA^ U U AGU U A UUACA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-875_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AAUACCUCAGUCUUAUCAGGUG -22
Get sequence
|
| Star sequence | Spt-Mir-875_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- CCUGGAAAUACUGAGGUUGAGU -57
Get sequence
|
