MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-875

Family name MIR-875 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cfa-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL841372.1: 967114-967170 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 GL841372.1: 966959-967017 [-] UCSC Ensembl
Mir-875 GL841372.1: 967114-967170 [-] UCSC Ensembl
Seed AUACCUC
Precursor
(pre-Mir +30nt flank)		 
UACUGGAAGAUGCAAACAGUUCUGUGGUACAAUACCUCAGUCUUAUCAGGUGUUCUUUAAAAUCACCUGGAAAUGCUGAGGUUGCGUUUCACUGAACUCAGAAGCCUCAAGAUGACA
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Structure
        10          20        30        40        50        
UACUGGAAGAUGCAAAC--|    U    U  AAU        C  A       UUCUU 
                   AGUUC GUGG AC   ACCUCAGU UU UCAGGUG     \
                   UCAAG CACU UG   UGGAGUCG AA GGUCCAC     U
ACAGUAGAACUCCGAAGAC^    U    U  CGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-875_5p
mirBase accessionNone
Sequence 
0- AAUACCUCAGUCUUAUCAGGUGU -23
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Star sequence

Sha-Mir-875_3p*
mirBase accessionNone
Sequence 
35- CCUGGAAAUGCUGAGGUUGCGU -57
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